SNP Profiles matching AMAZ 5/2 [CHA]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
1._GC-03-008-1-08	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
2._GC-03-008-1-08	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
3._GC-03-008-1-08	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
4._GC-03-008-1-08	CT	CC	AA	TT	TT	GG	AA	GG	AA	TT	GG	GG	AA	GG
5._AMAZ_5_/2	_	_	AA	TT	TT	_	AA	GG	AA	TT	_	_	AA	_
6._AMAZ_5_/2	_	_	AA	TT	TT	_	AA	GG	AA	TT	_	_	AA	_
7._AMAZ_5_/2	_	_	AA	TT	TT	_	AA	GG	AA	TT	_	_	AA	_
8._AMAZ_5_/2	_	_	AA	TT	TT	_	AA	GG	AA	TT	_	_	AA	_
9._RUQ_93	_	_	AA	TT	TT	_	AA	GG	AA	TT	_	_	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
1._GC-03-008-1-08	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
2._GC-03-008-1-08	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
3._GC-03-008-1-08	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
4._GC-03-008-1-08	AA	CC	CC	GG	GG	AA	CT	CT	TT	GG	AA	TT	CC	CC
5._AMAZ_5_/2	AA	CC	CC	GG	GG	AA	_	CT	_	GG	_	_	_	CC
6._AMAZ_5_/2	AA	CC	CC	GG	GG	AA	_	CT	_	GG	_	_	_	CC
7._AMAZ_5_/2	AA	CC	CC	GG	GG	AA	_	CT	_	GG	_	_	_	CC
8._AMAZ_5_/2	AA	CC	CC	GG	GG	AA	_	CT	_	GG	_	_	_	CC
9._RUQ_93	AA	CC	CC	GG	GG	AA	_	CT	_	GG	_	_	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
1._GC-03-008-1-08	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
2._GC-03-008-1-08	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
3._GC-03-008-1-08	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
4._GC-03-008-1-08	CC	CT	GG	AA	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC
5._AMAZ_5_/2	_	CT	_	AA	_	CT	_	_	_	TT	_	_	TT	CC
6._AMAZ_5_/2	_	CT	_	AA	_	CT	_	_	_	TT	_	_	TT	CC
7._AMAZ_5_/2	_	CT	_	AA	_	CT	_	_	_	TT	_	_	TT	CC
8._AMAZ_5_/2	_	CT	_	AA	_	CT	_	_	_	TT	_	_	TT	CC
9._RUQ_93	_	CT	_	AA	_	TT	_	_	_	TT	_	_	TT	CC

	43
_Input profile	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-03-008-1-08	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-03-008-1-08	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-03-008-1-08	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-03-008-1-08	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._AMAZ_5_/2	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._AMAZ_5_/2	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._AMAZ_5_/2	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._AMAZ_5_/2	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._RUQ_93	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_5_/2 RUQ_93

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

3._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

4._AMAZ_5_/2 GC-03-008-1-08

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

5._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 9 > FP

Dapeng Zhang, 2016

6._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 8 > FP

Dapeng Zhang, 2016

7._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 5

Dapeng Zhang, 2016

8._AMAZ_5_/2

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._AMAZ_5_/2 RUQ_93

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484